- Author:
- 0Huitzil <frcastaneda@protonmail.com>
- Date:
- 2025-09-17 15:39:53+12:00
- Desc:
- Updated fiducial markers for nerves
- Permanent Source URI:
- https://staging.physiomeproject.org/workspace/add/rawfile/317fdad54e9aa42c0bd3e06b61ea9d9833d9364c/mapclient workflow/docs/lung_annotations.json
{
"general_settings": {},
"id": "scaffold creator settings",
"metadata": {
"annotations": [
{
"id": "ILX:0793130",
"name": "anterior border of left lung"
},
{
"id": "ILX:0793129",
"name": "anterior border of right lung"
},
{
"id": "ILX:0778112",
"name": "apex of left lung"
},
{
"id": "ILX:0778113",
"name": "apex of right lung"
},
{
"id": "ILX:0793187",
"name": "base of left lung surface"
},
{
"id": "ILX:0793577",
"name": "base of lower lobe of left lung surface"
},
{
"id": "ILX:0793579",
"name": "base of lower lobe of right lung surface"
},
{
"id": "ILX:0793580",
"name": "base of middle lobe of right lung surface"
},
{
"id": "ILX:0793188",
"name": "base of right lung surface"
},
{
"id": "ILX:0793578",
"name": "base of upper lobe of left lung surface"
},
{
"id": "ILX:0793582",
"name": "horizontal fissure of middle lobe of right lung"
},
{
"id": "ILX:0746327",
"name": "horizontal fissure of right lung"
},
{
"id": "ILX:0793583",
"name": "horizontal fissure of upper lobe of right lung"
},
{
"id": "ILX:0793601",
"name": "lateral surface of left lung"
},
{
"id": "ILX:0793584",
"name": "lateral surface of lower lobe of left lung"
},
{
"id": "ILX:0793585",
"name": "lateral surface of lower lobe of right lung"
},
{
"id": "ILX:0793586",
"name": "lateral surface of middle lobe of right lung"
},
{
"id": "ILX:0793602",
"name": "lateral surface of right lung"
},
{
"id": "ILX:0793587",
"name": "lateral surface of upper lobe of left lung"
},
{
"id": "ILX:0793588",
"name": "lateral surface of upper lobe of right lung"
},
{
"id": "ILX:0778124",
"name": "laterodorsal tip of middle lobe of right lung"
},
{
"id": "UBERON:0002168",
"name": "left lung"
},
{
"id": "ILX:0793186",
"name": "left lung surface"
},
{
"id": "UBERON:0008953",
"name": "lower lobe of left lung"
},
{
"id": "ILX:0793192",
"name": "lower lobe of left lung surface"
},
{
"id": "UBERON:0002171",
"name": "lower lobe of right lung"
},
{
"id": "ILX:0793191",
"name": "lower lobe of right lung surface"
},
{
"id": "UBERON:0002048",
"name": "lung"
},
{
"id": "ILX:0778120",
"name": "medial base of left lung"
},
{
"id": "ILX:0778121",
"name": "medial base of right lung"
},
{
"id": "ILX:0793599",
"name": "medial surface of left lung"
},
{
"id": "ILX:0793589",
"name": "medial surface of lower lobe of left lung"
},
{
"id": "ILX:0793590",
"name": "medial surface of lower lobe of right lung"
},
{
"id": "ILX:0793591",
"name": "medial surface of middle lobe of right lung"
},
{
"id": "ILX:0793600",
"name": "medial surface of right lung"
},
{
"id": "ILX:0793592",
"name": "medial surface of upper lobe of left lung"
},
{
"id": "ILX:0793593",
"name": "medial surface of upper lobe of right lung"
},
{
"id": "UBERON:0002174",
"name": "middle lobe of right lung"
},
{
"id": "ILX:0793193",
"name": "middle lobe of right lung surface"
},
{
"id": "ILX:0778115",
"name": "oblique fissure of left lung"
},
{
"id": "ILX:0793594",
"name": "oblique fissure of lower lobe of left lung"
},
{
"id": "ILX:0793596",
"name": "oblique fissure of lower lobe of right lung"
},
{
"id": "ILX:0793597",
"name": "oblique fissure of middle lobe of right lung"
},
{
"id": "ILX:0778114",
"name": "oblique fissure of right lung"
},
{
"id": "ILX:0793595",
"name": "oblique fissure of upper lobe of left lung"
},
{
"id": "ILX:0793598",
"name": "oblique fissure of upper lobe of right lung"
},
{
"id": "UBERON:0002167",
"name": "right lung"
},
{
"id": "ILX:0793185",
"name": "right lung surface"
},
{
"id": "UBERON:0008952",
"name": "upper lobe of left lung"
},
{
"id": "ILX:0793194",
"name": "upper lobe of left lung surface"
},
{
"id": "UBERON:0002170",
"name": "upper lobe of right lung"
},
{
"id": "ILX:0793195",
"name": "upper lobe of right lung surface"
},
{
"id": "ILX:0778118",
"name": "ventral base of left lung"
},
{
"id": "ILX:0778122",
"name": "ventral base of right lung"
}
]
},
"scaffold_settings": {
"deleteElementRanges": "",
"scaffoldPackage": {
"_ScaffoldPackage": true,
"rotation": [
0.0,
0.0,
0.0
],
"scaffoldSettings": {
"Accessory lobe": false,
"Accessory lobe base midpoint x, y": [
0.0,
0.25
],
"Accessory lobe dorsal height": 0.5,
"Accessory lobe dorsal width": 0.5,
"Accessory lobe length": 0.5,
"Accessory lobe medial curvature about z-axis": 0.0,
"Accessory lobe ventral height": 0.5,
"Accessory lobe ventral width": 0.5,
"Accessory lobe ventral-left rotation degrees": 0.0,
"Diaphragm centre x": 0.0,
"Diaphragm centre y": 0.0,
"Diaphragm curvature x": 1.0,
"Diaphragm curvature y": 1.0,
"Left lung base medial protrusion": 0.0,
"Left lung depth": 0.9,
"Left lung dorsal-ventral medial curvature": 3.0,
"Left lung dorsal-ventral medial curvature bias": 1.0,
"Left lung height": 1.0,
"Left lung ventral edge sharpness factor": 0.8,
"Left lung ventral-medial rotation degrees": 0.0,
"Left lung width": 0.7,
"Left-right apex medial shear displacement": 0.15,
"Left-right apex ventral shear displacement": -0.2,
"Left-right lung spacing": 0.7,
"Material Parameters": null,
"Number of left lung lobes": 2,
"Open fissures": false,
"Refine": false,
"Refine number of elements": 4,
"Right lung base medial protrusion": 0.0,
"Right lung depth": 0.9,
"Right lung dorsal-ventral medial curvature": 3.0,
"Right lung dorsal-ventral medial curvature bias": 1.0,
"Right lung height": 1.0,
"Right lung ventral edge sharpness factor": 0.8,
"Right lung ventral-medial rotation degrees": 0.0,
"Right lung width": 0.7
},
"scaffoldTypeName": "3D Lung 2",
"scale": [
1.0,
1.0,
1.0
],
"translation": [
0.0,
0.0,
0.0
]
}
},
"segmentation_data_settings": {},
"version": "1.0.0"
}
